If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ), 'gf_id' => 'HOM05D000634', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000634' ), 'data_identifier' => 'HOM05D000634', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000634', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '896', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p29430' => 'bna', 'A02p10990' => 'bna', 'A03p15080' => 'bna', 'A03p18280' => 'bna', 'A04p25260' => 'bna', 'A04p34540' => 'bna', 'A05p01140' => 'bna', 'A05p12890' => 'bna', 'A06p38910' => 'bna', 'A09p04620' => 'bna', 'A09p39810' => 'bna', 'Aa31LG1G28050' => 'aar', 'Aa31LG2G20570' => 'aar', 'Aa31LG2G9740' => 'aar', 'Aa31LG3G9740' => 'aar', 'Aa31LG5G4370' => 'aar', 'Aa31LG7G8710' => 'aar', 'Aa31sc37G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.606' => 'aag', 'Actinidia06127' => 'ach', 'Actinidia08679' => 'ach', 'Actinidia10181' => 'ach', 'Actinidia13060' => 'ach', 'Actinidia16151' => 'ach', 'Actinidia17526' => 'ach', 'Actinidia28099' => 'ach', 'Actinidia28510' => 'ach', 'Actinidia30076' => 'ach', 'Actinidia37595' => 'ach', 'Actinidia39964' => 'ach', 'Ah.02g126800' => 'amhyb', 'Ah.14g083240' => 'amhyb', 'AL1G39410' => 'aly', 'AL2G15930' => 'aly', 'AL3G18340' => 'aly', 'AL4G28160' => 'aly', 'AL4G46090' => 'aly', 'AL516U10020' => 'aly', 'AL8G21980' => 'aly', 'AL8G28290' => 'aly', 'Aqoxy2G01883' => 'aox', 'Aqoxy3G01563' => 'aox', 'Aqoxy5G02617' => 'aox', 'Aqoxy6G02773' => 'aox', 'Aqoxy7G00023' => 'aox', 'Aqoxy7G01405' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1B2AXH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20NY3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55FLCK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W4GGI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8HGF59' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIK56R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G02MLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I5SC86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I71KET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NNEL1B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8HP05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFP1EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SL80WV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TX634E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9CTIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YRJ7XY' => 'arhy', 'AT1G26340' => 'ath', 'AT1G60660' => 'ath', 'AT2G32720' => 'ath', 'AT2G46650' => 'ath', 'AT5G48810' => 'ath', 'AT5G53560' => 'ath', 'ATR0215G021' => 'atr', 'ATR0620G032' => 'atr', 'ATR0743G095' => 'atr', 'ATR0827G177' => 'atr', 'Atru.chr11.1601' => 'acertr', 'Atru.chr12.2330' => 'acertr', 'Atru.chr13.801' => 'acertr', 'Atru.chr3.2971' => 'acertr', 'Atru.chr5.2120' => 'acertr', 'Atru.chr5.736' => 'acertr', 'Atru.chr5.737' => 'acertr', 'Atru.chr7.1464' => 'acertr', 'AUR62003079' => 'cqu', 'AUR62004536' => 'cqu', 'AUR62006039' => 'cqu', 'AUR62007896' => 'cqu', 'AUR62008912' => 'cqu', 'AUR62010894' => 'cqu', 'AUR62021405' => 'cqu', 'AUR62022718' => 'cqu', 'AUR62031798' => 'cqu', 'AUR62035589' => 'cqu', 'BcaB01g04244' => 'bca', 'BcaB02g10493' => 'bca', 'BcaB04g19584' => 'bca', 'BcaB04g20280' => 'bca', 'BcaB05g22056' => 'bca', 'BcaB06g28629' => 'bca', 'BcaB08g35722' => 'bca', 'BcaC02g07889' => 'bca', 'BcaC02g10620' => 'bca', 'BcaC02g11355' => 'bca', 'BcaC02g12657' => 'bca', 'BcaC03g14407' => 'bca', 'BcaC04g20439' => 'bca', 'BcaC04g22251' => 'bca', 'BcaC04g23762' => 'bca', 'BcaC05g26420' => 'bca', 'BcaC05g26634' => 'bca', 'BcaC06g30757' => 'bca', 'BcaC06g31816' => 'bca', 'BcaC09g49383' => 'bca', 'BolC2t07952H' => 'bol', 'BolC3t14172H' => 'bol', 'BolC3t14515H' => 'bol', 'BolC4t21783H' => 'bol', 'BolC4t23248H' => 'bol', 'BolC4t24224H' => 'bol', 'BolC4t27705H' => 'bol', 'BolC4t28718H' => 'bol', 'BolC5t31195H' => 'bol', 'BolC7t44461H' => 'bol', 'BolC9t53422H' => 'bol', 'BolC9t55068H' => 'bol', 'BolC9t57231H' => 'bol', 'BraA01t03078Z' => 'bra', 'BraA02t06164Z' => 'bra', 'BraA03t10802Z' => 'bra', 'BraA03t10804Z' => 'bra', 'BraA03t11088Z' => 'bra', 'BraA04t18029Z' => 'bra', 'BraA04t18911Z' => 'bra', 'BraA05t19113Z' => 'bra', 'BraA05t20229Z' => 'bra', 'BraA06t26805Z' => 'bra', 'BraA09t36098Z' => 'bra', 'BraA09t37366Z' => 'bra', 'BraA09t39481Z' => 'bra', 'C01p37210' => 'bna', 'C03p17590' => 'bna', 'C03p21330' => 'bna', 'C04p01300' => 'bna', 'C04p16910' => 'bna', 'C04p25840' => 'bna', 'C04p62320' => 'bna', 'C04p72300' => 'bna', 'C05p24590' => 'bna', 'C05p51000' => 'bna', 'C07p39420' => 'bna', 'C09p04940' => 'bna', 'C09p21670' => 'bna', 'CAN.G1045.51' => 'can', 'CAN.G1054.21' => 'can', 'CAN.G1241.31' => 'can', 'CAN.G1272.3' => 'can', 'CAN.G414.10' => 'can', 'CAN.G481.67' => 'can', 'CAN.G707.22' => 'can', 'CAN.G767.45' => 'can', 'CAN.G771.78' => 'can', 'CAN.G771.79' => 'can', 'CANSAT01G3106' => 'cansat', 'CANSAT21G1583' => 'cansat', 'CANSAT35G0495' => 'cansat', 'CANSAT56G0722' => 'cansat', 'CANSAT56G1189' => 'cansat', 'CANSAT64G0085' => 'cansat', 'CANSAT78G0157' => 'cansat', 'CARHR025580' => 'chi', 'CARHR052270' => 'chi', 'CARHR126610' => 'chi', 'CARHR142000' => 'chi', 'CARHR182930' => 'chi', 'Carub.0001s2466' => 'cru', 'Carub.0002s0467' => 'cru', 'Carub.0003s0662' => 'cru', 'Carub.0004s1408' => 'cru', 'Carub.0004s2936' => 'cru', 'Carub.0008s0854' => 'cru', 'Carub.0008s1373' => 'cru', 'Ca_05002_v3' => 'car', 'Ca_09532_v3' => 'car', 'Ca_15914_v3' => 'car', 'Ca_16747_v3' => 'car', 'Ca_20037_v3' => 'car', 'Ca_23497_v3' => 'car', 'Ca_25571_v3' => 'car', 'CBR_g29425' => 'cbr', 'CBR_g48144' => 'cbr', 'Cc00_g19700' => 'ccan', 'Cc01_g17010' => 'ccan', 'Cc02_g01060' => 'ccan', 'Cc02_g39770' => 'ccan', 'Cc03_g07720' => 'ccan', 'Cc06_g10460' => 'ccan', 'Cc11_g11790' => 'ccan', 'CDE02G2860' => 'cde', 'CDE04G0956' => 'cde', 'CDE06G0943' => 'cde', 'CDE07G2049' => 'cde', 'CDE08G1487' => 'cde', 'CDE09G0494' => 'cde', 'CDE10G0343' => 'cde', 'CDE10G1337' => 'cde', 'CDE10G1350' => 'cde', 'CDE11G1111' => 'cde', 'Cfa002572' => 'cfa', 'Cfa008861' => 'cfa', 'Cfa014922' => 'cfa', 'Cfa016188' => 'cfa', 'Cfa018024' => 'cfa', 'Cfa025348' => 'cfa', 'Ciclev10002812m.g' => 'ccl', 'Ciclev10006192m.g' => 'ccl', 'Ciclev10009944m.g' => 'ccl', 'Ciclev10022811m.g' => 'ccl', 'Ciclev10022818m.g' => 'ccl', 'Ciclev10022828m.g' => 'ccl', 'Ciclev10033049m.g' => 'ccl', 'CiPaw.01G122200' => 'cil', 'CiPaw.02G043400' => 'cil', 'CiPaw.03G149200' => 'cil', 'CiPaw.03G225400' => 'cil', 'CiPaw.04G105400' => 'cil', 'CiPaw.05G123700' => 'cil', 'CiPaw.05G201600' => 'cil', 'CiPaw.06G043300' => 'cil', 'CiPaw.15G047400' => 'cil', 'CiPaw.16G033900' => 'cil', 'CiPaw.16G034000' => 'cil', 'CiPaw.16G034300' => 'cil', 'CiPaw.16G034500' => 'cil', 'ClCG01G000210' => 'cla', 'ClCG05G000550' => 'cla', 'ClCG05G003370' => 'cla', 'ClCG06G002800' => 'cla', 'ClCG06G007700' => 'cla', 'ClCG07G001960' => 'cla', 'ClCG08G010480' => 'cla', 'ClCG11G002140' => 'cla', 'COL.COLO4_04559' => 'col', 'COL.COLO4_10275' => 'col', 'COL.COLO4_14337' => 'col', 'COL.COLO4_27854' => 'col', 'COL.COLO4_28543' => 'col', 'COL.COLO4_34745' => 'col', 'Cpa.g.c35137' => 'cpa', 'Cpa.g.sc1.152' => 'cpa', 'Cpa.g.sc1345.1' => 'cpa', 'Cpa.g.sc21.117' => 'cpa', 'Cpa.g.sc3.129' => 'cpa', 'Cpa.g.sc40.96' => 'cpa', 'Cpa.g.sc494.4' => 'cpa', 'Cpa.g.sc59.129' => 'cpa', 'Cpa.g.sc8.154' => 'cpa', 'Cre13.g586550' => 'cre', 'Cre16.g659250' => 'cre', 'Cre16.g659300' => 'cre', 'Cre16.g659350' => 'cre', 'CsaV3_2G001920' => 'csa', 'CsaV3_2G011470' => 'csa', 'CsaV3_3G007770' => 'csa', 'CsaV3_3G007780' => 'csa', 'CsaV3_3G011020' => 'csa', 'CsaV3_3G029940' => 'csa', 'CsaV3_5G000250' => 'csa', 'CsaV3_6G008970' => 'csa', 'CsaV3_6G033730' => 'csa', 'CSS0006109' => 'camsi', 'CSS0009983' => 'camsi', 'CSS0010840' => 'camsi', 'CSS0017106' => 'camsi', 'CSS0021018' => 'camsi', 'CSS0025028' => 'camsi', 'CSS0034032' => 'camsi', 'CSS0034130' => 'camsi', 'DCAR_004719' => 'dca', 'DCAR_006985' => 'dca', 'DCAR_010579' => 'dca', 'DCAR_012038' => 'dca', 'DCAR_014554' => 'dca', 'DCAR_020352' => 'dca', 'DCAR_026604' => 'dca', 'DCAR_030048' => 'dca', 'Dinv01597' => 'din', 'Dinv02489' => 'din', 'Dinv04647' => 'din', 'Dinv12693' => 'din', 'Dinv19202' => 'din', 'Dinv20150' => 'din', 'Dinv29235' => 'din', 'Dinv29586' => 'din', 'Dinv34050' => 'din', 'Dinv34241' => 'din', 'Dinv35367' => 'din', 'Dinv36688' => 'din', 'Dinv41666' => 'din', 'Dinv44982' => 'din', 'Duzib068G1345' => 'dzi', 'Duzib093G1229' => 'dzi', 'Duzib133G0762' => 'dzi', 'Duzib138G0750' => 'dzi', 'Duzib138G1167' => 'dzi', 'Duzib168G0435' => 'dzi', 'Duzib205G1191' => 'dzi', 'Duzib212G0692' => 'dzi', 'Duzib251G0159' => 'dzi', 'Duzib251G0745' => 'dzi', 'Duzib268G0419' => 'dzi', 'ECA232G2440' => 'eca', 'ECA233G0277' => 'eca', 'ECA233G2971' => 'eca', 'ECA233G4917' => 'eca', 'ECA236G1869' => 'eca', 'ECA236G4194' => 'eca', 'ECA248G1851' => 'eca', 'EL10Ac1g00216' => 'bvu', 'EL10Ac3g05215' => 'bvu', 'EL10Ac6g15020' => 'bvu', 'EL10Ac7g17839' => 'bvu', 'EL10Ac8g18379' => 'bvu', 'Eucgr.A01428' => 'egr', 'Eucgr.B03141' => 'egr', 'Eucgr.C03730' => 'egr', 'Eucgr.F00125' => 'egr', 'Eucgr.H00059' => 'egr', 'Eucgr.H00800' => 'egr', 'Eucgr.K02164' => 'egr', 'FAN01G0814' => 'fan', 'FAN01G2177' => 'fan', 'FAN03G0685' => 'fan', 'FAN06G0108' => 'fan', 'FAN06G0868' => 'fan', 'FAN07G0390' => 'fan', 'FAN07G2511' => 'fan', 'FAN10G0551' => 'fan', 'FAN10G1087' => 'fan', 'FAN10G4043' => 'fan', 'FAN10G4167' => 'fan', 'FAN12G0264' => 'fan', 'FAN12G2020' => 'fan', 'FAN15G0504' => 'fan', 'FAN17G3089' => 'fan', 'FAN19G0575' => 'fan', 'FAN22G0768' => 'fan', 'FAN23G2800' => 'fan', 'FAN24G1803' => 'fan', 'FAN26G1740' => 'fan', 'FAN26G1772' => 'fan', 'FAN27G1581' => 'fan', 'FAN28G1003' => 'fan', 'FvH4_1g06100' => 'fve', 'FvH4_2g19040' => 'fve', 'FvH4_4g00670' => 'fve', 'FvH4_4g29701' => 'fve', 'FvH4_7g17290' => 'fve', 'FvH4_7g32530' => 'fve', 'Glyma.01G008000' => 'gma', 'Glyma.03G080100' => 'gma', 'Glyma.03G259600' => 'gma', 'Glyma.04G044300' => 'gma', 'Glyma.04G231800' => 'gma', 'Glyma.06G044800' => 'gma', 'Glyma.06G131900' => 'gma', 'Glyma.06G133300' => 'gma', 'Glyma.07G052400' => 'gma', 'Glyma.08G354100' => 'gma', 'Glyma.16G021300' => 'gma', 'Glyma.16G078300' => 'gma', 'Glyma.18G154900' => 'gma', 'Glyma.18G170300' => 'gma', 'Glyma.19G258500' => 'gma', 'Gohir.A02G081503' => 'ghi', 'Gohir.A03G051200' => 'ghi', 'Gohir.A03G105300' => 'ghi', 'Gohir.A03G155400' => 'ghi', 'Gohir.A05G207750' => 'ghi', 'Gohir.A07G135400' => 'ghi', 'Gohir.A07G201200' => 'ghi', 'Gohir.A08G194550' => 'ghi', 'Gohir.A09G204700' => 'ghi', 'Gohir.A09G204750' => 'ghi', 'Gohir.A11G138200' => 'ghi', 'Gohir.A12G114500' => 'ghi', 'Gohir.A12G247500' => 'ghi', 'Gohir.A13G084232' => 'ghi', 'Gohir.A13G179700' => 'ghi', 'Gohir.D02G089400' => 'ghi', 'Gohir.D02G130600' => 'ghi', 'Gohir.D03G116500' => 'ghi', 'Gohir.D05G211200' => 'ghi', 'Gohir.D07G140300' => 'ghi', 'Gohir.D07G207500' => 'ghi', 'Gohir.D08G212300' => 'ghi', 'Gohir.D09G198400' => 'ghi', 'Gohir.D09G198450' => 'ghi', 'Gohir.D11G144300' => 'ghi', 'Gohir.D12G117800' => 'ghi', 'Gohir.D12G248200' => 'ghi', 'Gohir.D13G083500' => 'ghi', 'Gohir.D13G187800' => 'ghi', 'Gorai.001G152300' => 'gra', 'Gorai.001G233900' => 'gra', 'Gorai.003G122800' => 'gra', 'Gorai.004G225700' => 'gra', 'Gorai.005G100100' => 'gra', 'Gorai.005G146500' => 'gra', 'Gorai.006G222000' => 'gra', 'Gorai.007G154500' => 'gra', 'Gorai.008G127700' => 'gra', 'Gorai.008G266200' => 'gra', 'Gorai.009G217700' => 'gra', 'Gorai.010G244200' => 'gra', 'Gorai.013G095300' => 'gra', 'GSVIVG01009376001' => 'vvi', 'GSVIVG01012239001' => 'vvi', 'GSVIVG01016973001' => 'vvi', 'GSVIVG01028636001' => 'vvi', 'GSVIVG01038613001' => 'vvi', 'HanXRQChr03g0094041' => 'han', 'HanXRQChr04g0104941' => 'han', 'HanXRQChr04g0104951' => 'han', 'HanXRQChr04g0104961' => 'han', 'HanXRQChr04g0104971' => 'han', 'HanXRQChr04g0104981' => 'han', 'HanXRQChr04g0110811' => 'han', 'HanXRQChr04g0120381' => 'han', 'HanXRQChr06g0171221' => 'han', 'HanXRQChr06g0171231' => 'han', 'HanXRQChr06g0172041' => 'han', 'HanXRQChr07g0185711' => 'han', 'HanXRQChr07g0206391' => 'han', 'HanXRQChr08g0212521' => 'han', 'HanXRQChr08g0225681' => 'han', 'HanXRQChr13g0413051' => 'han', 'HanXRQChr14g0445411' => 'han', 'HanXRQChr16g0509511' => 'han', 'Haze_00268' => 'cav', 'Haze_11601' => 'cav', 'Haze_18106' => 'cav', 'Haze_24803' => 'cav', 'Haze_26922' => 'cav', 'Haze_27492' => 'cav', 'Hma1.2p1_0094F.1_g047110' => 'hma', 'Hma1.2p1_0226F.1_g095700' => 'hma', 'Hma1.2p1_0309F.1_g120460' => 'hma', 'Hma1.2p1_0368F.1_g137260' => 'hma', 'Hma1.2p1_0415F.1_g148070' => 'hma', 'HPP92_000892' => 'vpl', 'HPP92_008083' => 'vpl', 'HPP92_008103' => 'vpl', 'HPP92_008131' => 'vpl', 'HPP92_014458' => 'vpl', 'HPP92_021373' => 'vpl', 'HPP92_022427' => 'vpl', 'HPP92_024404' => 'vpl', 'HPP92_026115' => 'vpl', 'Hund05557' => 'sun', 'Hund05828' => 'sun', 'Hund09687' => 'sun', 'Hund21035' => 'sun', 'Hund27166' => 'sun', 'Lalb_Chr03g0041741' => 'lal', 'Lalb_Chr04g0255541' => 'lal', 'Lalb_Chr08g0239921' => 'lal', 'Lalb_Chr08g0239931' => 'lal', 'Lalb_Chr08g0239941' => 'lal', 'Lalb_Chr10g0100751' => 'lal', 'Lalb_Chr11g0062821' => 'lal', 'Lalb_Chr11g0067161' => 'lal', 'Lalb_Chr12g0209661' => 'lal', 'Lalb_Chr13g0291171' => 'lal', 'Lalb_Chr14g0371861' => 'lal', 'Lalb_Chr17g0342851' => 'lal', 'Lj1C1025G8' => 'lonja', 'Lj1C86G10' => 'lonja', 'Lj1g0006776' => 'lja', 'Lj1g0011889' => 'lja', 'Lj1g0019263' => 'lja', 'Lj2C1131T2' => 'lonja', 'Lj2g0012271' => 'lja', 'Lj2g0022986' => 'lja', 'Lj3g0004579' => 'lja', 'Lj3g0027974' => 'lja', 'Lj3P901T44' => 'lonja', 'Lj4P720T81' => 'lonja', 'Lj6A777T41' => 'lonja', 'Lsat_1_v5_gn_1_17000' => 'lsa', 'Lsat_1_v5_gn_2_135121' => 'lsa', 'Lsat_1_v5_gn_3_140500' => 'lsa', 'Lsat_1_v5_gn_6_60441' => 'lsa', 'Lsat_1_v5_gn_8_45940' => 'lsa', 'Lsat_1_v5_gn_8_4661' => 'lsa', 'Lsat_1_v5_gn_8_89940' => 'lsa', 'Lsat_1_v5_gn_8_98361' => 'lsa', 'Lsat_1_v5_gn_9_50301' => 'lsa', 'Lsat_1_v5_gn_9_50321' => 'lsa', 'Manes.01G026500' => 'mes', 'Manes.01G038200' => 'mes', 'Manes.01G242500' => 'mes', 'Manes.03G152300' => 'mes', 'Manes.05G193000' => 'mes', 'Manes.12G044900' => 'mes', 'Manes.13G045900' => 'mes', 'Manes.15G050100' => 'mes', 'Manes.16G108500' => 'mes', 'Manes.18G044001' => 'mes', 'Mapoly0153s0009' => 'mpo', 'Mapoly0153s0010' => 'mpo', 'Mapoly0176s0003' => 'mpo', 'MBI01_g10130_MAGBIO' => 'mbi', 'MBI04_g33416_MAGBIO' => 'mbi', 'MBI06_g47615_MAGBIO' => 'mbi', 'MBI07_g32041_MAGBIO' => 'mbi', 'MBI07_g39813_MAGBIO' => 'mbi', 'MBI07_g40373_MAGBIO' => 'mbi', 'MBI10_g06897_MAGBIO' => 'mbi', 'MBI11_g04275_MAGBIO' => 'mbi', 'MBI12_g13709_MAGBIO' => 'mbi', 'MBI19_g06122_MAGBIO' => 'mbi', 'MCO04G170' => 'mco', 'MCO08G237' => 'mco', 'MCO09G249' => 'mco', 'MD00G1019100' => 'mdo', 'MD00G1035900' => 'mdo', 'MD01G1226000' => 'mdo', 'MD02G1065500' => 'mdo', 'MD04G1006200' => 'mdo', 'MD05G1175200' => 'mdo', 'MD07G1155300' => 'mdo', 'MD07G1296500' => 'mdo', 'MD10G1164300' => 'mdo', 'MD13G1059800' => 'mdo', 'MD13G1059900' => 'mdo', 'MD16G1059300' => 'mdo', 'Medtr3g092095' => 'mtr', 'Medtr3g102780' => 'mtr', 'Medtr4g022350' => 'mtr', 'Medtr5g045630' => 'mtr', 'Medtr6g088690' => 'mtr', 'Medtr7g117990' => 'mtr', 'Medtr8g027080' => 'mtr', 'MELO3C004588.2' => 'cme', 'MELO3C005907.2' => 'cme', 'MELO3C005994.2' => 'cme', 'MELO3C006316.2' => 'cme', 'MELO3C011415.2' => 'cme', 'MELO3C020457.2' => 'cme', 'MELO3C022247.2' => 'cme', 'MELO3C026666.2' => 'cme', 'MELO3C031591.2' => 'cme', 'Migut.D02525' => 'egut', 'Migut.E00045' => 'egut', 'Migut.F00169' => 'egut', 'Migut.F01003' => 'egut', 'Migut.K00539' => 'egut', 'Migut.N00375' => 'egut', 'Migut.N00616' => 'egut', 'Migut.N01523' => 'egut', 'Migut.N01689' => 'egut', 'MSTRG.10603' => 'ama', 'MSTRG.17370' => 'ama', 'MSTRG.18002' => 'ama', 'MSTRG.18852' => 'ama', 'MSTRG.18853' => 'ama', 'MSTRG.2301' => 'ama', 'MSTRG.24619' => 'ama', 'MSTRG.26999' => 'ama', 'MSTRG.28281' => 'ama', 'MSTRG.40' => 'ama', 'MSTRG.8536' => 'ama', 'MSTRG.8624' => 'ama', 'Nitab4.5_0000015g0140' => 'nta', 'Nitab4.5_0000045g0200' => 'nta', 'Nitab4.5_0000231g0040' => 'nta', 'Nitab4.5_0000307g0170' => 'nta', 'Nitab4.5_0000319g0380' => 'nta', 'Nitab4.5_0000566g0120' => 'nta', 'Nitab4.5_0000850g0040' => 'nta', 'Nitab4.5_0000934g0170' => 'nta', 'Nitab4.5_0001564g0070' => 'nta', 'Nitab4.5_0002223g0010' => 'nta', 'Nitab4.5_0002641g0100' => 'nta', 'Nitab4.5_0003151g0070' => 'nta', 'Nitab4.5_0003312g0010' => 'nta', 'Nitab4.5_0004707g0050' => 'nta', 'Nitab4.5_0005668g0050' => 'nta', 'Nitab4.5_0006368g0030' => 'nta', 'Nitab4.5_0007734g0010' => 'nta', 'Nitab4.5_0008871g0010' => 'nta', 'Nitab4.5_0013781g0020' => 'nta', 'Nn1g07853' => 'nnu', 'Nn1g09436' => 'nnu', 'Nn1g09437' => 'nnu', 'Nn3g17501' => 'nnu', 'Nn3g18881' => 'nnu', 'Nn3g19963' => 'nnu', 'Nn4g23492' => 'nnu', 'Nn5g30494' => 'nnu', 'Nn6g35327' => 'nnu', 'Oeu001470.1' => 'oeu', 'Oeu004066.1' => 'oeu', 'Oeu007869.1' => 'oeu', 'Oeu022251.1' => 'oeu', 'Oeu031532.1' => 'oeu', 'Oeu037039.1' => 'oeu', 'Oeu043136.1' => 'oeu', 'Oeu051537.1' => 'oeu', 'Os01g0971500' => 'osa', 'Os02g0649800' => 'osa', 'Os05g0108800' => 'osa', 'Os08g0386300' => 'osa', 'Os09g0334600' => 'osa', 'Os10g0518200' => 'osa', 'Os12g0223300' => 'osa', 'Peaxi162Scf00081g01223' => 'pax', 'Peaxi162Scf00107g02024' => 'pax', 'Peaxi162Scf00175g00523' => 'pax', 'Peaxi162Scf00517g00625' => 'pax', 'Peaxi162Scf00618g10022' => 'pax', 'Peaxi162Scf00665g00326' => 'pax', 'Peaxi162Scf00740g00422' => 'pax', 'Peaxi162Scf00767g00022' => 'pax', 'Peaxi162Scf00856g00324' => 'pax', 'Peaxi162Scf00938g00429' => 'pax', 'PGR042G2120' => 'pgr', 'PGR042G2166' => 'pgr', 'PGR044G2515' => 'pgr', 'PGR083G1625' => 'pgr', 'PGR083G2500' => 'pgr', 'PGR102G0793' => 'pgr', 'PGR102G1858' => 'pgr', 'PGR142G4162' => 'pgr', 'PGSC0003DMG400000127' => 'stu', 'PGSC0003DMG400000359' => 'stu', 'PGSC0003DMG400001228' => 'stu', 'PGSC0003DMG400005465' => 'stu', 'PGSC0003DMG400007706' => 'stu', 'PGSC0003DMG400017661' => 'stu', 'PGSC0003DMG400018534' => 'stu', 'PGSC0003DMG400020160' => 'stu', 'PGSC0003DMG400021534' => 'stu', 'PGSC0003DMG400028310' => 'stu', 'Phvul.003G040400' => 'pvu', 'Phvul.004G176300' => 'pvu', 'Phvul.006G115900' => 'pvu', 'Phvul.008G125800' => 'pvu', 'Phvul.009G048900' => 'pvu', 'Phvul.009G070232' => 'pvu', 'Phvul.010G010400' => 'pvu', 'Phvul.010G117000' => 'pvu', 'Phvul.L002081' => 'pvu', 'Potri.001G314200' => 'ptr', 'Potri.002G242500' => 'ptr', 'Potri.004G157800' => 'ptr', 'Potri.010G156900' => 'ptr', 'Potri.011G055236' => 'ptr', 'Potri.011G070800' => 'ptr', 'Potri.012G024600' => 'ptr', 'Potri.013G029600' => 'ptr', 'Potri.014G019200' => 'ptr', 'Potri.014G167550' => 'ptr', 'Potri.015G007600' => 'ptr', 'Potri.017G054300' => 'ptr', 'Potri.018G087600' => 'ptr', 'Pp3c10_10860' => 'ppa', 'Pp3c14_25320' => 'ppa', 'Pp3c21_6830' => 'ppa', 'Pp3c22_6000' => 'ppa', 'Pp3c2_32610' => 'ppa', 'PRCOL_00000579' => 'pco', 'PRCOL_00004722' => 'pco', 'PRCOL_00004910' => 'pco', 'PRCOL_00005141' => 'pco', 'PRCOL_00006463' => 'pco', 'Prupe.1G006400' => 'ppe', 'Prupe.1G289700' => 'ppe', 'Prupe.2G194100' => 'ppe', 'Prupe.2G316100' => 'ppe', 'Prupe.7G220000' => 'ppe', 'Prupe.8G202900' => 'ppe', 'Psat1g047320' => 'psa', 'Psat2g132000' => 'psa', 'Psat3g001200' => 'psa', 'Psat4g163320' => 'psa', 'Psat5g038320' => 'psa', 'Psat5g074200' => 'psa', 'Psat7g236680' => 'psa', 'PSO017G4328' => 'pso', 'PSO017G4579' => 'pso', 'PSO063G6625' => 'pso', 'PSO135G0914' => 'pso', 'PSO170G1361' => 'pso', 'PSO210G1463' => 'pso', 'PSO210G3259' => 'pso', 'PSO384G5121' => 'pso', 'PSO478G2044' => 'pso', 'PSO478G4330' => 'pso', 'PSO675G7559' => 'pso', 'PSO732G0314' => 'pso', 'PSO782G0721' => 'pso', 'QL02p002832' => 'qlo', 'QL03p073739' => 'qlo', 'QL06p024306' => 'qlo', 'QL08p046309' => 'qlo', 'QL09p007539' => 'qlo', 'QL09p054521' => 'qlo', 'QL12p041125' => 'qlo', 'RcHm_v2.0_Chr1g0360711' => 'rch', 'RcHm_v2.0_Chr1g0382371' => 'rch', 'RcHm_v2.0_Chr2g0091851' => 'rch', 'RcHm_v2.0_Chr4g0386041' => 'rch', 'RcHm_v2.0_Chr4g0437951' => 'rch', 'RcHm_v2.0_Chr6g0284851' => 'rch', 'Rhsim03G0212700' => 'rsi', 'Rhsim05G0040300' => 'rsi', 'Rhsim06G0059900' => 'rsi', 'Rhsim07G0001500' => 'rsi', 'Rhsim09G0125900' => 'rsi', 'Rhsim09G0208400' => 'rsi', 'Rhsim09G0208700' => 'rsi', 'Rhsim13G0045200' => 'rsi', 'Sabra02G0184800' => 'sbr', 'Sabra08G0073700' => 'sbr', 'Sabra10G0119200' => 'sbr', 'Sabra12G0006100' => 'sbr', 'Sabra12G0009500' => 'sbr', 'Sabra15G0005600' => 'sbr', 'Sabra16G0198700' => 'sbr', 'Sabra17G0041100' => 'sbr', 'Sabra17G0046100' => 'sbr', 'Sabra18G0075900' => 'sbr', 'SalBow1G5990' => 'sbo', 'SalBow2G0036' => 'sbo', 'SalBow3G1918' => 'sbo', 'SalBow3G3358' => 'sbo', 'SalBow4G0212' => 'sbo', 'SalBow5G3251' => 'sbo', 'Sc01g0002370' => 'sci', 'Sc05g0002180' => 'sci', 'Sc11g0002550' => 'sci', 'Sc15g0005550' => 'sci', 'Sc15g0005770' => 'sci', 'Sc19g0000720' => 'sci', 'Sc19g0000730' => 'sci', 'Sc19g0007120' => 'sci', 'Sc24g0003550' => 'sci', 'Sed0000537' => 'sed', 'Sed0001171' => 'sed', 'Sed0001782' => 'sed', 'Sed0003454' => 'sed', 'Sed0004500' => 'sed', 'Sed0004987' => 'sed', 'Sed0005564' => 'sed', 'Sed0006080' => 'sed', 'Sed0007924' => 'sed', 'Sed0015925' => 'sed', 'Sed0016790' => 'sed', 'SEGI_07516' => 'sgi', 'SEGI_11152' => 'sgi', 'SEGI_12148' => 'sgi', 'SEGI_12642' => 'sgi', 'SEGI_31187' => 'sgi', 'SEGI_35141' => 'sgi', 'SGA_v2.0_scaffold18G08449' => 'sas', 'SGA_v2.0_scaffold19G08728' => 'sas', 'SGA_v2.0_scaffold232G43537' => 'sas', 'SGA_v2.0_scaffold44G16832' => 'sas', 'SGA_v2.0_scaffold581G53043' => 'sas', 'SGA_v2.0_scaffold59G20669' => 'sas', 'SGA_v2.0_scaffold6G03461' => 'sas', 'SGA_v2.0_scaffold6G03462' => 'sas', 'SHI02329' => 'shi', 'SMO119G0525' => 'smo', 'SMO146G0103' => 'smo', 'SMO147G0234' => 'smo', 'SMO307G0060' => 'smo', 'Solyc01g096270.3' => 'sly', 'Solyc03g082600.4' => 'sly', 'Solyc04g078140.3' => 'sly', 'Solyc05g012080.3' => 'sly', 'Solyc06g007930.3' => 'sly', 'Solyc06g053170.4' => 'sly', 'Solyc06g053180.4' => 'sly', 'Solyc06g083440.3' => 'sly', 'Solyc09g061230.3' => 'sly', 'Solyc12g008470.2' => 'sly', 'Solyc12g098320.3' => 'sly', 'Sopen01g040030' => 'spe', 'Sopen03g022360' => 'spe', 'Sopen04g031770' => 'spe', 'Sopen05g006870' => 'spe', 'Sopen06g002780' => 'spe', 'Sopen06g018240' => 'spe', 'Sopen06g034800' => 'spe', 'Sopen09g023960' => 'spe', 'Sopen12g003420' => 'spe', 'Sopen12g033100' => 'spe', 'Sp1g22350' => 'spa', 'Sp2g04060' => 'spa', 'Sp2g19190' => 'spa', 'Sp4g15060' => 'spa', 'Sp4g28700' => 'spa', 'Sp6g15700' => 'spa', 'TAR362G0206' => 'tar', 'TAR362G1227' => 'tar', 'TAR365G0410' => 'tar', 'TAR375G0617' => 'tar', 'TAR381G1425' => 'tar', 'TAR624G0108' => 'tar', 'TAR625G1065' => 'tar', 'TAR629G1952' => 'tar', 'TAR633G2640' => 'tar', 'TAR633G2775' => 'tar', 'TAR636G0709' => 'tar', 'THA.LOC104799950' => 'tha', 'THA.LOC104801045' => 'tha', 'THA.LOC104802087' => 'tha', 'THA.LOC104802674' => 'tha', 'THA.LOC104807536' => 'tha', 'THA.LOC104808516' => 'tha', 'THA.LOC104813275' => 'tha', 'THA.LOC104816103' => 'tha', 'THA.LOC104817389' => 'tha', 'THA.LOC104821648' => 'tha', 'THA.LOC104822502' => 'tha', 'THA.LOC104825161' => 'tha', 'Thecc.01G225500' => 'tca', 'Thecc.01G336500' => 'tca', 'Thecc.02G327200' => 'tca', 'Thecc.02G327600' => 'tca', 'Thecc.03G205300' => 'tca', 'Thecc.04G205400' => 'tca', 'Thecc.08G092200' => 'tca', 'Thecc.09G100800' => 'tca', 'Thhalv10001679m.g' => 'esa', 'Thhalv10005107m.g' => 'esa', 'Thhalv10009081m.g' => 'esa', 'Thhalv10014996m.g' => 'esa', 'Thhalv10017407m.g' => 'esa', 'Thhalv10021984m.g' => 'esa', 'Thhalv10023761m.g' => 'esa', 'TPR.G21375' => 'tpr', 'TPR.G23724' => 'tpr', 'TPR.G33628' => 'tpr', 'TPR.G33725' => 'tpr', 'TPR.G4703' => 'tpr', 'TPR.G5583' => 'tpr', 'TPR.G7311' => 'tpr', 'TWI09G0538' => 'twi', 'TWI12G1118' => 'twi', 'TWI12G1372' => 'twi', 'TWI14G1407' => 'twi', 'TWI18G0687' => 'twi', 'TWI34G0189' => 'twi', 'TWI36G0168' => 'twi', 'TWI39G0841' => 'twi', 'TWI59G1166' => 'twi', 'TWI63G1727' => 'twi', 'TWI75G0732' => 'twi', 'TWI79G1333' => 'twi', 'unitig_0.g1071' => 'ugi', 'unitig_749.g13587' => 'ugi', 'unitig_8.g4996' => 'ugi', 'unitig_899.g15021' => 'ugi', 'unitig_90.g27517' => 'ugi', 'vmacro02759' => 'vma', 'vmacro04292' => 'vma', 'vmacro06420' => 'vma', 'vmacro10148' => 'vma', 'vmacro10438' => 'vma', 'vmacro10853' => 'vma', 'vmacro14752' => 'vma', 'vmacro15523' => 'vma', 'vmacro17043' => 'vma', 'vmacro20924' => 'vma', 'vmacro21455' => 'vma', 'VMungo0331G1205' => 'vmu', 'VMungo0331G1727' => 'vmu', 'VMungo0464G0268' => 'vmu', 'VMungo0540G2491' => 'vmu', 'VMungo1215G3023' => 'vmu', 'VMungo1309G0141' => 'vmu', 'VMungo1309G3039' => 'vmu', 'VMungo1383G0967' => 'vmu', 'Zm00001eb042030' => 'zma', 'Zm00001eb043440' => 'zma', 'Zm00001eb057570' => 'zma', 'Zm00001eb139860' => 'zma', 'Zm00001eb178560' => 'zma', 'Zm00001eb214730' => 'zma', 'Zm00001eb220110' => 'zma', 'Zm00001eb248960' => 'zma', 'Zm00001eb267040' => 'zma', 'Zm00001eb356000' => 'zma', 'Zm00001eb362250' => 'zma', 'Zm00001eb411250' => 'zma' ) $gf_id = 'HOM05D000634' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000634' ) $data_identifier = 'HOM05D000634' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 16, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 9, 'cre' => (int) 4, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 14, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 29, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 18, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 9, 'sun' => (int) 5, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mco' => (int) 3, 'mdo' => (int) 12, 'mtr' => (int) 7, 'cme' => (int) 9, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 13, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 13, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 9, 'sed' => (int) 11, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 11, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 12, 'tca' => (int) 8, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1